We have re-implemented most of this code in the Python programming language, with the exception of some of the standalone third-party binaries ( 3Seq and GENECONV).ģSeq is released under the Creative Commons license ( CC BY-NC-SA 4.0), which restricts commerical use. This program runs a suite of recombination detection methods to filter recombinant nucleotide sequences from a multiple sequence alignment or to detect recombination breakpoints in a query sequence by comparing it against a reference set. The developers of RDP, specifically Darren Martin, kindly provided the source code for the most recent version ( RDP5) and permission to modify and redistribute this code. RDP is a widely popular program for detecting recombination in genetic sequences - however, it has only been available as Windows binaries. ![]() OpenRDP is an open-source re-implementation of the RDP recombination detection program.
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